SNP Profiles matching NA 670

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CC	TT	TT	AA	TT	GT	CT	CC	AA	AG	CC	AG
1._NA_670	CC	AG	CC	TT	TT	AA	TT	GT	CT	CC	AA	AG	CC	AG
2._NA_670	CC	AG	CC	TT	TT	AA	TT	GT	CT	CC	AA	AG	CC	AG
3._NA_670	CC	AG	CC	TT	TT	AA	TT	GT	CT	CC	AA	AG	CC	AG
4._GC-05-169-4-22	CC	AG	CC	TT	TT	AA	TT	GT	CT	CC	AA	AG	CC	AG
5._GC-05-169-4-22	CC	AG	CC	TT	TT	AA	TT	GT	CT	CC	AA	AG	CC	AG
6._GC-05-169-4-22	CC	AG	CC	TT	TT	AA	TT	GT	CT	CC	AA	AG	CC	AG
7._GC-05-169-4-22	CC	AG	CC	TT	TT	AA	TT	GT	CT	CC	AA	AG	CC	AG
8._RUQ_1238	CC	AG	CC	TT	TT	AA	TT	GT	CT	CC	AA	AG	CC	AG
9._RUQ_1238	_	AG	CC	TT	_	_	_	GT	_	_	_	_	CC	AG
10._NA_670	CC	AG	CC	TT	TT	AA	TT	GT	CT	CC	AA	AG	CC	AG
11._MARPER_28	CC	AA	CC	TT	-	AA	TT	-	CC	-	AA	AG	-	GG
12._MARPER_37	CC	AA	CC	TT	-	AA	TT	-	CC	-	AA	AG	-	AG
13._MARPER_38	CC	AA	CG	TT	-	AA	TT	-	CC	-	AA	AG	-	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CT	CC	CG	GG	AA	CC	AC	GG	GG	CT	CC
1._NA_670	TT	AA	GG	CT	CC	CG	GG	AA	CC	AC	GG	GG	CT	CC
2._NA_670	TT	AA	GG	CT	CC	CG	GG	AA	CC	AC	GG	GG	CT	CC
3._NA_670	TT	AA	GG	CT	CC	CG	GG	AA	CC	AC	GG	GG	CT	CC
4._GC-05-169-4-22	TT	AA	GG	CT	CC	CG	GG	AA	CC	AC	GG	GG	CT	CC
5._GC-05-169-4-22	TT	AA	GG	CT	CC	CG	GG	AA	CC	AC	GG	GG	CT	CC
6._GC-05-169-4-22	TT	AA	GG	CT	CC	CG	GG	AA	CC	AC	GG	GG	CT	CC
7._GC-05-169-4-22	TT	AA	GG	CT	CC	CG	GG	AA	CC	AC	GG	GG	CT	CC
8._RUQ_1238	TT	AA	GG	CT	CC	CG	GG	AA	CC	AC	GG	GG	CT	CC
9._RUQ_1238	_	_	_	_	CC	CG	GG	_	CC	AC	GG	GG	CT	CC
10._NA_670	TT	AA	GG	CT	CC	CG	GG	AA	CC	AC	GG	GG	CT	CC
11._MARPER_28	TT	AA	GG	-	CC	-	GG	AA	CC	-	GG	-	TT	CC
12._MARPER_37	TT	AT	GG	-	CC	-	GG	AA	CC	-	GG	-	CC	CC
13._MARPER_38	TT	AA	GG	-	CC	-	GG	AA	CC	-	GG	-	CT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
1._NA_670	AA	GG	AA	CC	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
2._NA_670	AA	GG	AA	CC	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
3._NA_670	AA	GG	AA	CC	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
4._GC-05-169-4-22	AA	GG	AA	CC	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
5._GC-05-169-4-22	AA	GG	AA	CC	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
6._GC-05-169-4-22	AA	GG	AA	CC	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
7._GC-05-169-4-22	AA	GG	AA	CC	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
8._RUQ_1238	AA	GG	AA	CC	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X
9._RUQ_1238	AA	_	AA	CC	AG	CG	AA	CC	GG	CC	_	_	X_X	X_X
10._NA_670	AA	GG	AA	CC	AG	GG	AA	CC	GG	CC	TT	GG	X_X	X_X
11._MARPER_28	AA	GG	-	CC	AA	-	-	-	GG	-	TT	-	X_X	X_X
12._MARPER_37	AA	GG	-	CT	AG	-	-	-	GG	-	TT	-	X_X	X_X
13._MARPER_38	AA	GG	-	CC	AA	-	-	-	GG	-	TT	-	X_X	X_X

Input profile: NA_670

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Mars Center for Cocoa Science, Brazil

Location: 5422 2 > FP

Dapeng Zhang, 2016

1._NA_670

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5422 5 > FP

Dapeng Zhang, 2016

2._NA_670

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5422 4 > FP

Dapeng Zhang, 2016

3._NA_670

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5422 3 > FP

Dapeng Zhang, 2016

4._NA_670 GC-05-169-4-22

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

5._NA_670 GC-05-169-4-22

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

6._NA_670 GC-05-169-4-22

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

7._NA_670 GC-05-169-4-22

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

8._NA_670 RUQ_1238

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._NA_670 RUQ_1238

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._NA_670

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D317 T4

Dapeng Zhang, 2016

11._MARPER_28

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 647A

Dapeng Zhang, 2014

12._MARPER_37

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 661

Dapeng Zhang, 2014

13._MARPER_38

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 167

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25